Index

A

accounts (virtmat.middleware.resconfig.resconfig.WorkerConfig attribute), [1] accounts_allow (virtmat.middleware.resconfig.resconfig.QueueConfig attribute), [1] accounts_deny (virtmat.middleware.resconfig.resconfig.QueueConfig attribute), [1] add_node() (virtmat.middleware.engine.wfengine.WFEngine method) add_node_button_clicked() (virtmat.middleware.engine.wfengine_jupyter.WFEnginejupyter method) add_nodes_button_clicked() (virtmat.middleware.engine.wfengine_jupyter.WFEnginejupyter method)

add_worker_from_scratch() (virtmat.middleware.resconfig.resconfig.ResConfig method) add_workflow() (virtmat.middleware.engine.wfengine.WFEngine method) add_workflow_button_clicked() (virtmat.middleware.engine.wfengine_jupyter.WFEnginejupyter method) add_workflow_method_changed() (in module virtmat.middleware.engine.wfengine_jupyter) append_wf_id() (virtmat.middleware.engine.wfengine.WFEngine method) args (virtmat.middleware.resconfig.resconfig.CommandConfig attribute), [1] await_slurm_job_state() (in module virtmat.middleware.utilities)

C

cancel_job() (virtmat.middleware.engine.wfengine.WFEngine method) cancel_launch_button_clicked() (virtmat.middleware.engine.wfengine_jupyter.WFEnginejupyter method) check_fw_ids() (virtmat.middleware.query.wfquery.WFQuery method) check_jobcancel() (virtmat.middleware.engine.wfengine_remote.WFEngineRemote method) clear_button_outputs() (in module virtmat.middleware.engine.wfengine_jupyter) clear_consoleoutput() (in module virtmat.middleware.engine.wfengine_jupyter) cmd (virtmat.middleware.resconfig.resconfig.CommandConfig attribute), [1] CommandConfig (class in virtmat.middleware.resconfig.resconfig)

commands (virtmat.middleware.resconfig.resconfig.CommandConfig attribute), [1] commit_remove_workflow_button_clicked() (virtmat.middleware.engine.wfengine_jupyter.WFEnginejupyter method) ConfigurationException configure() (in module virtmat.middleware.resconfig.resconfig) configure_button_clicked() (in module virtmat.middleware.engine.wfengine_jupyter) configure_engine_method_changed() (in module virtmat.middleware.engine.wfengine_jupyter) create_wf_id_select() (virtmat.middleware.engine.wfengine_jupyter.WFEnginejupyter method) CustomException

D

db_select() (in module virtmat.middleware.query.dbquery) default (virtmat.middleware.resconfig.resconfig.ResourceConfig property) default_account (virtmat.middleware.resconfig.resconfig.WorkerConfig property) default_commands (virtmat.middleware.resconfig.resconfig.WorkerConfig attribute), [1] default_envvars (virtmat.middleware.resconfig.resconfig.WorkerConfig attribute), [1]

default_launchdir (virtmat.middleware.resconfig.resconfig.WorkerConfig attribute), [1] default_modules (virtmat.middleware.resconfig.resconfig.WorkerConfig attribute), [1] default_queue (virtmat.middleware.resconfig.resconfig.WorkerConfig property) default_venv (virtmat.middleware.resconfig.resconfig.WorkerConfig attribute), [1] default_worker (virtmat.middleware.resconfig.resconfig.ResConfig attribute) dump_engine_button_clicked() (virtmat.middleware.engine.wfengine_jupyter.WFEnginejupyter method)

E

envvars (virtmat.middleware.resconfig.resconfig.WorkerConfig attribute), [1]

exec_cancel() (in module virtmat.middleware.utilities) (virtmat.middleware.engine.wfengine_remote.WFEngineRemote method)

F

format_warning_wrapper() (in module virtmat.middleware.utilities) from_dict() (virtmat.middleware.engine.wfengine.WFEngine class method) (virtmat.middleware.engine.wfengine_remote.WFEngineRemote class method) (virtmat.middleware.resconfig.resconfig.ResConfigSerializable class method)

from_scratch() (virtmat.middleware.resconfig.resconfig.ResConfig class method) (virtmat.middleware.resconfig.resconfig.WorkerConfig class method) func_name (virtmat.middleware.engine.wfengine_jupyter.WFEnginejupyter attribute) fw_ids (virtmat.middleware.engine.wfengine.WFEngine property)

G

get_command() (virtmat.middleware.resconfig.resconfig.CommandConfig method) (virtmat.middleware.resconfig.resconfig.ModuleConfig method) get_command_output() (in module virtmat.middleware.utilities) get_custom_qadapter() (in module virtmat.middleware.resconfig.qadapter) get_data() (virtmat.middleware.query.wfquery.WFQuery method) get_default_qadapter() (in module virtmat.middleware.resconfig.qadapter) get_default_resconfig() (in module virtmat.middleware.resconfig.resconfig) get_env_modules() (in module virtmat.middleware.utilities) get_failed() (virtmat.middleware.engine.wfengine.WFEngine method) get_fw_ids() (virtmat.middleware.query.wfquery.WFQuery method) get_fw_info() (virtmat.middleware.query.wfquery.WFQuery method) get_i_data() (virtmat.middleware.query.wfquery.WFQuery method) get_i_names() (virtmat.middleware.query.wfquery.WFQuery method) get_inactive_envs() (in module virtmat.middleware.resconfig.resconfig) get_inactive_modules() (in module virtmat.middleware.resconfig.resconfig) get_launch() (in module virtmat.middleware.query.dbquery) get_logger() (in module virtmat.middleware.utilities) get_lost_jobs() (virtmat.middleware.engine.wfengine.WFEngine method)

get_nodes_providing() (virtmat.middleware.query.wfquery.WFQuery method) get_o_data() (virtmat.middleware.query.wfquery.WFQuery method) get_o_names() (virtmat.middleware.query.wfquery.WFQuery method) get_pre_rocket() (in module virtmat.middleware.resconfig.qadapter) get_qadapter() (in module virtmat.middleware.resconfig.qadapter) get_resconfig_loc() (in module virtmat.middleware.resconfig.resconfig) get_resource() (virtmat.middleware.resconfig.resconfig.QueueConfig method) get_slurm_job_state() (in module virtmat.middleware.utilities) get_slurm_job_state_json() (in module virtmat.middleware.utilities) get_slurm_job_state_parse() (in module virtmat.middleware.utilities) get_task_info() (virtmat.middleware.query.wfquery.WFQuery method) get_unreserved_nodes() (in module virtmat.middleware.utilities) (virtmat.middleware.engine.wfengine.WFEngine method) get_venv() (in module virtmat.middleware.utilities) get_wf_ids() (virtmat.middleware.query.wfquery.WFQuery method) get_wf_info() (virtmat.middleware.query.wfquery.WFQuery method) get_worker_config() (in module virtmat.middleware.resconfig.resconfig) get_worker_get_queue() (in module virtmat.middleware.resconfig.qadapter) groups_allow (virtmat.middleware.resconfig.resconfig.QueueConfig attribute), [1]

I

InvalidStateException

io_info() (in module virtmat.middleware.query.wfquery)

J

job_category (virtmat.middleware.engine.wfengine_jupyter.WFEnginejupyter attribute)

jqadapter (virtmat.middleware.engine.wfengine_jupyter.WFEnginejupyter attribute)

L

launcher() (virtmat.middleware.engine.wfengine_remote.WFEngineRemote method) lmod_env_module() (in module virtmat.middleware.utilities) LmodError

logger (virtmat.middleware.engine.wfengine.WFEngine attribute) (virtmat.middleware.engine.wfengine_jupyter.WFEnginejupyter attribute) (virtmat.middleware.engine.wfengine_remote.WFEngineRemote attribute) lpad_button_clicked() (virtmat.middleware.engine.wfengine_jupyter.WFEnginejupyter method)

M

manage_launcher_button_clicked() (in module virtmat.middleware.engine.wfengine_jupyter) manage_nodes_button_clicked() (virtmat.middleware.engine.wfengine_jupyter.WFEnginejupyter method) manage_workflows_button_clicked() (virtmat.middleware.engine.wfengine_jupyter.WFEnginejupyter method) maximum (virtmat.middleware.resconfig.resconfig.ResourceConfig property) minimum (virtmat.middleware.resconfig.resconfig.ResourceConfig property) module virtmat virtmat.middleware virtmat.middleware.engine virtmat.middleware.engine.wfengine virtmat.middleware.engine.wfengine_jupyter virtmat.middleware.engine.wfengine_remote virtmat.middleware.exceptions virtmat.middleware.query virtmat.middleware.query.dbquery virtmat.middleware.query.wfquery virtmat.middleware.resconfig.cli virtmat.middleware.resconfig.qadapter virtmat.middleware.resconfig.resconfig virtmat.middleware.utilities

module_cmd() (in module virtmat.middleware.utilities) module_load() (in module virtmat.middleware.utilities) module_remove() (in module virtmat.middleware.utilities) ModuleConfig (class in virtmat.middleware.resconfig.resconfig) modules (virtmat.middleware.resconfig.resconfig.WorkerConfig attribute), [1]

N

name (virtmat.middleware.engine.wfengine.WFEngine property) (virtmat.middleware.resconfig.resconfig.ModuleConfig attribute), [1] (virtmat.middleware.resconfig.resconfig.QueueConfig attribute), [1] (virtmat.middleware.resconfig.resconfig.ResourceConfig attribute), [1] (virtmat.middleware.resconfig.resconfig.WorkerConfig attribute), [1]

new_engine_button_clicked() (virtmat.middleware.engine.wfengine_jupyter.WFEnginejupyter method) new_workflow_button_clicked() (in module virtmat.middleware.engine.wfengine_jupyter) node_id_select (virtmat.middleware.engine.wfengine_jupyter.WFEnginejupyter attribute) nodes_status_button_clicked() (virtmat.middleware.engine.wfengine_jupyter.WFEnginejupyter method)

P

path (virtmat.middleware.resconfig.resconfig.ModuleConfig attribute), [1]

prefix (virtmat.middleware.resconfig.resconfig.ModuleConfig attribute), [1] public (virtmat.middleware.resconfig.resconfig.QueueConfig attribute), [1]

Q

qadapter_button_clicked() (virtmat.middleware.engine.wfengine_jupyter.WFEnginejupyter method) qlaunch() (virtmat.middleware.engine.wfengine.WFEngine method)

QueueConfig (class in virtmat.middleware.resconfig.resconfig) queues (virtmat.middleware.resconfig.resconfig.WorkerConfig attribute), [1]

R

remote_cluster_changed() (in module virtmat.middleware.engine.wfengine_jupyter) remove_wf_id() (virtmat.middleware.engine.wfengine.WFEngine method) remove_workflow() (virtmat.middleware.engine.wfengine.WFEngine method) remove_workflow_button_clicked() (virtmat.middleware.engine.wfengine_jupyter.WFEnginejupyter method) rerun_node() (virtmat.middleware.engine.wfengine.WFEngine method) rerun_node_button_clicked() (virtmat.middleware.engine.wfengine_jupyter.WFEnginejupyter method) ResConfig (class in virtmat.middleware.resconfig.resconfig) resconfig_button_clicked() (in module virtmat.middleware.engine.wfengine_jupyter)

ResConfigSerializable (class in virtmat.middleware.resconfig.resconfig) resource_type_checker() (in module virtmat.middleware.resconfig.resconfig) ResourceConfig (class in virtmat.middleware.resconfig.resconfig) ResourceConfigurationError resources (virtmat.middleware.resconfig.resconfig.QueueConfig attribute), [1] resume_engine_button_clicked() (virtmat.middleware.engine.wfengine_jupyter.WFEnginejupyter method) rlaunch() (virtmat.middleware.engine.wfengine.WFEngine method) rows_inputs (virtmat.middleware.engine.wfengine_jupyter.WFEnginejupyter attribute) rows_outputs (virtmat.middleware.engine.wfengine_jupyter.WFEnginejupyter attribute)

S

set_default_queue() (virtmat.middleware.resconfig.resconfig.WorkerConfig method) set_defaults_from_guess() (in module virtmat.middleware.resconfig.resconfig) set_resource() (virtmat.middleware.resconfig.resconfig.QueueConfig method) setup_remote_configuration() (virtmat.middleware.engine.wfengine_remote.WFEngineRemote method) setup_remote_fworker() (virtmat.middleware.engine.wfengine_remote.WFEngineRemote method) setup_remote_launchpad() (virtmat.middleware.engine.wfengine_remote.WFEngineRemote method) setup_remote_qadapter() (virtmat.middleware.engine.wfengine_remote.WFEngineRemote method) setup_resconfig() (in module virtmat.middleware.resconfig.cli) show_launcher_status() (virtmat.middleware.engine.wfengine.WFEngine method) show_nodes_status() (virtmat.middleware.engine.wfengine.WFEngine method) show_wf_status() (virtmat.middleware.engine.wfengine.WFEngine method)

size_inp (virtmat.middleware.engine.wfengine_jupyter.WFEnginejupyter attribute) size_out (virtmat.middleware.engine.wfengine_jupyter.WFEnginejupyter attribute) slaunch() (virtmat.middleware.engine.wfengine_remote.WFEngineRemote method) SlurmError start() (virtmat.middleware.engine.wfengine.WFEngine method) start_launcher_clicked() (virtmat.middleware.engine.wfengine_jupyter.WFEnginejupyter method) status_button_clicked() (virtmat.middleware.engine.wfengine_jupyter.WFEnginejupyter method) status_detail() (virtmat.middleware.engine.wfengine.WFEngine method) status_detailed_button_clicked() (virtmat.middleware.engine.wfengine_jupyter.WFEnginejupyter method) status_summary() (virtmat.middleware.engine.wfengine.WFEngine method) stop() (virtmat.middleware.engine.wfengine.WFEngine method) stop_launcher_clicked() (virtmat.middleware.engine.wfengine_jupyter.WFEnginejupyter method)

T

task_info() (in module virtmat.middleware.query.wfquery) TestingException to_dict() (virtmat.middleware.engine.wfengine.WFEngine method) (virtmat.middleware.engine.wfengine_remote.WFEngineRemote method) (virtmat.middleware.resconfig.resconfig.ResConfig method) (virtmat.middleware.resconfig.resconfig.ResConfigSerializable method)

type_ (virtmat.middleware.resconfig.resconfig.WorkerConfig attribute), [1]

U

update_node() (virtmat.middleware.engine.wfengine.WFEngine method) update_node_button_clicked() (virtmat.middleware.engine.wfengine_jupyter.WFEnginejupyter method)

update_rerun_node() (virtmat.middleware.engine.wfengine.WFEngine method) update_rerun_node_button_clicked() (virtmat.middleware.engine.wfengine_jupyter.WFEnginejupyter method)

V

validate_resource() (virtmat.middleware.resconfig.resconfig.QueueConfig method) validate_resources() (in module virtmat.middleware.resconfig.qadapter) versions (virtmat.middleware.resconfig.resconfig.ModuleConfig attribute), [1] virtmat module virtmat.middleware module virtmat.middleware.engine module virtmat.middleware.engine.wfengine module virtmat.middleware.engine.wfengine_jupyter module virtmat.middleware.engine.wfengine_remote module

virtmat.middleware.exceptions module virtmat.middleware.query module virtmat.middleware.query.dbquery module virtmat.middleware.query.wfquery module virtmat.middleware.resconfig.cli module virtmat.middleware.resconfig.qadapter module virtmat.middleware.resconfig.resconfig module virtmat.middleware.utilities module

W

wf_id_select (virtmat.middleware.engine.wfengine_jupyter.WFEnginejupyter attribute) wf_ids (virtmat.middleware.engine.wfengine.WFEngine property) wf_query (virtmat.middleware.engine.wfengine.WFEngine property) wfe (virtmat.middleware.engine.wfengine_jupyter.WFEnginejupyter attribute) WFEngine (class in virtmat.middleware.engine.wfengine)

WFEnginejupyter (class in virtmat.middleware.engine.wfengine_jupyter) WFEngineRemote (class in virtmat.middleware.engine.wfengine_remote) WFQuery (class in virtmat.middleware.query.wfquery) WorkerConfig (class in virtmat.middleware.resconfig.resconfig) workers (virtmat.middleware.resconfig.resconfig.ResConfig attribute)